Expanding the sequence spaces of synthetic binding protein using deep learning-based framework ProteinMPNN
Peer-Reviewed Publication
Updates every hour. Last Updated: 11-Sep-2025 15:11 ET (11-Sep-2025 19:11 GMT/UTC)
Research team used ProteinMPNN to expand the sequence space of synthetic binding proteins (SBPs), improving their solubility and stability, and showed ProteinMPNN-designed proteins outperform classical methods.
Researchers from Shanghaitech University, Shanghai Institute of Microsystem and Information Technology, Institute of Geology and Geophysics, Chinese Academy of Sciences have conducted measurements of X-ray fluorescence spectra excited by X-rays and electrons based on microcalorimeters. It was demonstrated that there are obvious differences between the fluorescence spectral lines excited by electrons and photons. This is a good example for elemental analysis based on fluorescence spectra in electron scanning microscopes. It also provides clear guidance for choosing X-ray excitation sources (such as Fe55 or X-ray tubes) or electron excitation sources (such as Sr90) in space exploration.
In the exploration of celestial bodies, such as Mars, the Moon, and asteroids, X-ray fluorescence analysis has emerged as a critical tool for elemental analysis. However, the varying selection rules and excitation sources introduce complexity. Specifically, these discrepancies can cause variations in the intensities of the characteristic spectral lines emitted by identical elements. These variations, compounded by the minimal energy spacing between these spectral lines, pose substantial challenges for conventional silicon drift detectors (SDD), hindering their ability to accurately differentiate these lines and provide detailed insights into the material structure. To overcome this challenge, a cryogenic X-ray spectrometer based on transition-edge sensor (TES) detector arrays is required to achieve precise measurements. This study measured and analyzed the K-edge characteristic lines of copper and the diverse L-edge characteristic lines of tungsten using a comparative analysis of the electron and X-ray excitation processes. For the electron excitation experiments, copper and tungsten targets were employed as X-ray sources, as they emit distinctive X-ray spectra upon electron-beam bombardment. In the photon excitation experiments, a molybdenum target was used to produce a continuous spectrum with the prominent Mo Kα lines to emit pure copper and tungsten samples. TES detectors were used for the comparative spectroscopic analysis. The initial comparison revealed no substantial differences in the Kα and Kβ lines of copper across different excitation sources. Similarly, the Lα lines of tungsten exhibited uniformity under different excitation sources. However, this investigation revealed pronounced differences within the Lβ line series. The study found that XRF spectra preferentially excite outer-shell electrons, in contrast to intrinsic spectra, owing to different photon and electron interaction mechanisms. Photon interactions are selection-rule-dependent and involve a single electron, whereas electron interactions can involve multiple electrons without such limitations. This leads to varied excitation transitions, as evidenced in the observed Lβ line series.
A team of University of Texas at Dallas researchers and their colleagues have discovered that the mixing of small particles between two solid electrolytes can generate an effect called a “space charge layer,” an accumulation of electric charge at the interface between the two materials.
The finding could aid the development of batteries with solid electrolytes, called solid-state batteries, for applications including mobile devices and electric vehicles.
Starting June 1, 2025, Dr. Jonas Ohland, laser physicist at GSI/FAIR, will lead the young investigator group ALADIN (Adaptive Laser Architecture Development and INtegration). For this purpose, he will receive funding of 2.8 million euros over five years from the German Federal Ministry of Research, Technology and Space as part of the “Fusionstalente” (fusion talents) program. The ALADIN project lays the foundation for the realization of stable, efficient lasers for inertial confinement fusion.
• Tracing the origin of an ultra-hot exoplanet: The chemical composition of WASP-121b suggests that it formed in a cool zone of its natal disc, comparable to the region of gas and ice giants in our Solar System.
• Methane indicates unexpected atmospheric dynamics: Despite extreme heat, methane was detected on the nightside – a finding that can be explained by strong vertical atmospheric circulation.• First detection of silicon monoxide in a planetary atmosphere: Measurements of this refractory gas allow quantifying the rocky material the planet had accumulated.