Optimizing RNA design with AI and an Ising machine: Encoding matters
Peer-Reviewed Publication
Updates every hour. Last Updated: 25-Oct-2026 15:15 ET (25-Oct-2026 19:15 GMT/UTC)
RNA design is central to next-generation therapeutics, yet identifying sequences that reliably fold into desired structures remains a major computational challenge, often constrained by high cost and time. A new study from Keio University explores the use of factorization machine with quadratic-optimization annealing (FMQA) for RNA inverse folding, while also examining how different encoding strategies may influence artificial intelligence (AI)-driven design performance, revealing an underexplored dimension of biomolecular engineering.
More than 90% of the key nutrients degrading the Mar Menor, such as ammonium, phosphorus, and silica, do not come from streams or continental groundwater, but rather through a mechanism that has so far been overlooked: water from the lagoon itself infiltrates the sediments and re-emerges loaded with nutrients that have accumulated over years. This is the conclusion of a recent study carried out by the Institute of Environmental Science and Technology of the Universitat Autònoma de Barcelona (ICTA-UAB), Spain, which questions the current restoration strategies for the Mar Menor, as they do not take this pathway of contamination into account.
Rosa Chiara Paolicelli’s team at the Department of Biomedical Sciences of Unil uncovered a new role for the TDP-43 protein in controlling the function of microglia, the immune cells of the brain. Their study shows how the loss of this protein in microglia may contribute to the development of neurological diseases. The findings have been published in Nature Neuroscience.
Researchers at The University of Osaka have developed an improved technique called “tapping-mode scanning probe electrospray ionization” (t-SPESI), allowing the analysis of regions within individual cells with greater sensitivity and stability. Through device miniaturization and molecular modification of the probe surface, the team achieved higher sensitivity and long-term stability, successfully visualizing lipid distributions in mouse brain tissue at a pixel size of 5 µm.
Immune checkpoints (ICs) are receptors that regulate immune responses through both activating and inhibitory mechanisms. Inflammatory microenvironment modulates IC expression through cytokines, metabolites, and oxidative signals. Immune checkpoint inhibitors not only enhance antitumor immunity but also reshape systemic immune networks. This review summarizes the molecular and cellular mechanisms by which ICs regulate inflammatory responses and highlights their roles across diverse pathological conditions.