Unlocking the genetic code of amur grape: Insights into plant cold tolerance and evolution

A pioneering study has meticulously pieced together the high-quality genome sequence of the Amur grape, Vitis amurensis, unveiling its evolutionary journey and the genetic secrets behind its exceptional cold tolerance. This genetic treasure trove opens new horizons for grape breeding, offering a blueprint for developing cultivars that can thrive in extreme climates and potentially enriching our grasp of plant adaptation and resilience.

The Amur grape, indigenous to eastern Asia, is known for its remarkable cold tolerance, able to withstand temperatures as low as -40°C. Despite its significant potential for breeding and agricultural applications, the absence of high-quality genomic data has limited advancements in understanding and improving this species. This gap in knowledge necessitated a comprehensive genomic study to elucidate the genetic mechanisms underlying its cold resistance and sex determination, which are critical for enhancing grape breeding and cultivation practices.

Scientists from the Shandong Academy of Grape and collaborating North China University have made a significant stride in viticulture research. Published in the prestigious journal Horticulture Research, the study (DOI: 10.1093/hr/uhae117) presents a high-quality genome sequence of the Amur grape, offering a treasure trove of data for future biological and breeding studies.

The assembled genome of the Amur grape spans approximately 522 Mb and includes 27,635 coding genes. Phylogenetic analysis indicates that Vitis riparia diverged first among the grape species examined. The data reveal that the Amur grape's exceptional cold tolerance is due to a robust network of cold resistance genes, which have evolved uniquely in this species. Additionally, multi-omics analysis identified significant genes responsible for resveratrol accumulation during berry development. A key discovery is the identification of a potential sex-determination region through selective sweep analysis. This region contains genes that may play a crucial role in determining the sex of the plants, which is vital for breeding practices. These findings provide valuable insights into the genetic factors that contribute to the Amur grape's resilience and reproductive traits, offering new avenues for grape breeding and cultivation.

Dr. Hongjun Zhao, a leading authority in grape genomics and corresponding author of the study, emphasizes the importance of this research, stating, "Our work not only illuminates the evolutionary journey of the Amur grape but also equips us with critical knowledge to enhance grape breeding programs, potentially leading to varieties better suited to climate extremes."

The applications of this research are manifold, ranging from the cultivation of cold-resistant grapevines to the broader understanding of plant sex determination. The insights could revolutionize viticulture practices and contribute to the development of crops that can withstand the harsh effects of climate change, ensuring food security and agricultural sustainability.

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References

DOI

10.1093/hr/uhae117

Original Source URL

https://doi.org/10.1093/hr/uhae117

Funding information

This research was supported by the Key Research and Development Project of Shandong Province (2022CXGC010605; 2021LZGC025), the Improved Variety Program of Shandong Province (2022LZGCQY019; 2020LZGC008), Shandong Natural Science Funding (ZR2020QC145; ZR2023QC239; ZR2021QC022; ZR2022QC076; ZR2023QC249; ZR2023QC217), the Scientific Research Guide Foundation of Shandong Academy of Grape (SDAG2021A01; SDAG2021A02; SDAG2021B11), the Shandong Academy of Agricultural Sciences, Introduction and Training of High-level Talents (CXGC2022E15), the National Horticulture Germplasm Resources Center-Amur Grapevine Germplasm Resources Branch Center (NHGRC2022-NH04), and the Species and Variety Germplasm Resources Protection Project (2130135).

About Horticulture Research

Horticulture Research is an open access journal of Nanjing Agricultural University and ranked number one in the Horticulture category of the Journal Citation Reports ™ from Clarivate, 2022. The journal is committed to publishing original research articles, reviews, perspectives, comments, correspondence articles and letters to the editor related to all major horticultural plants and disciplines, including biotechnology, breeding, cellular and molecular biology, evolution, genetics, inter-species interactions, physiology, and the origination and domestication of crops.