T2T wild C. asiatica genome. (IMAGE)
Caption
T2T wild C. asiatica genome. A. Phenotypic characteristics of different tissues of wild C. asiatica. All genomic data in our study were derived from leaves, while transcriptomic data were obtained from roots, stems, and leaves. B. Gene density and the distribution of telomeres and centromeres of C. asiatica genome. C. Genome characteristics of C. asiatica. The quantitative tracks are aggregated in 500-kb bins and the tracks from outside to inside are shown as follows: pseudochromosomes (Chr1 to Chr9), gene density, TE density, Gypsy LTR density, Copia LTR density, GC content, and chromosomal collinearity. D. Hi-C interaction matrix (100-kb resolution), A/B compartments (PCA score), gene density, TE density, and gene expression throughout chromosome 9. The Hi-C and RNA-seq data were derived from leaf tissues. E. Representative TAD structures in chromosome 9. . The 5-kb resolution was used for drawing Hi-C contact heatmap. F. Size distributions of topologically associated domains in the whole genome.
Credit
Horticulture Research
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CC BY